sequence_variant_affecting_splicing [SO_1000071]
A sequence_variant_effect where the way in which the primary transcriptional product is processed to form the mature transcript, specifically by the removal (splicing) of intron sequences is changed. OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen sequence_variant_affecting_splicing in VFB
Term Information
- ID: SO_1000071
- Name: sequence_variant_affecting_splicing
- Definition: A sequence_variant_effect where the way in which the primary transcriptional product is processed to form the mature transcript, specifically by the removal (splicing) of intron sequences is changed.
- Synonyms:
- Type:
- Comment: OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect.
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/SO_1000071",
"symbol": "",
"types": [
"Entity",
"Class",
"Deprecated"
],
"short_form": "SO_1000071",
"unique_facets": [
"Deprecated"
],
"label": "sequence_variant_affecting_splicing"
},
"description": [
"A sequence_variant_effect where the way in which the primary transcriptional product is processed to form the mature transcript, specifically by the removal (splicing) of intron sequences is changed."
],
"comment": [
"OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect."
]
},
"query": "Get JSON for Class",
"version": "c58c844",
"parents": [],
"relationships": [],
"related_individuals": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/IAO_0100001",
"database_cross_reference": [],
"label": "term replaced by",
"type": "term_replaced_by",
"confidence_value": ""
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/SO_0001568",
"types": [
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"Class",
"has_subClass"
],
"short_form": "SO_0001568",
"unique_facets": [
"Class"
],
"label": "splicing_variant"
}
}
],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [
{
"synonym": {
"scope": "has_exact_synonym",
"label": "sequence variant affecting splicing",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
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"Individual",
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],
"short_form": "Unattributed",
"unique_facets": [
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],
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
},
{
"synonym": {
"scope": "has_related_synonym",
"label": "mutation affecting splicing",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"unique_facets": [
"pub"
],
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
}
],
"def_pubs": []
}
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