sequence_variant_causing_polypeptide_truncation [SO_1000098]
The translational product is truncated at its C-terminus, usually a result of a nonsense codon change in transcript (SO:1000062). OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen sequence_variant_causing_polypeptide_truncation in VFB
Term Information
- ID: SO_1000098
- Name: sequence_variant_causing_polypeptide_truncation
- Definition: The translational product is truncated at its C-terminus, usually a result of a nonsense codon change in transcript (SO:1000062).
- Synonyms:
- Type:
- Comment: OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect.
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/SO_1000098",
"symbol": "",
"types": [
"Entity",
"Class",
"Deprecated"
],
"short_form": "SO_1000098",
"unique_facets": [
"Deprecated"
],
"label": "sequence_variant_causing_polypeptide_truncation"
},
"description": [
"The translational product is truncated at its C-terminus, usually a result of a nonsense codon change in transcript (SO:1000062)."
],
"comment": [
"OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect."
]
},
"query": "Get JSON for Class",
"version": "c58c844",
"parents": [],
"relationships": [],
"related_individuals": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/IAO_0100001",
"database_cross_reference": [],
"label": "term replaced by",
"type": "term_replaced_by",
"confidence_value": ""
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/SO_0001587",
"types": [
"Entity",
"Class"
],
"short_form": "SO_0001587",
"unique_facets": [
"Class"
],
"label": "stop_gained"
}
}
],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [
{
"synonym": {
"scope": "has_exact_synonym",
"label": "sequence variant causing polypeptide truncation",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
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"Individual",
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],
"short_form": "Unattributed",
"unique_facets": [
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],
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
},
{
"synonym": {
"scope": "has_related_synonym",
"label": "mutation causing polypeptide truncation",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
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"pub"
],
"short_form": "Unattributed",
"unique_facets": [
"pub"
],
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
}
],
"def_pubs": []
}
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