sequence_variation_affecting_coding_sequence [SO_1000054]

Any of the amino acid coding triplets of a gene are affected by the DNA mutation. OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect.
Tags:

Open sequence_variation_affecting_coding_sequence in VFB

Term Information

  • ID: SO_1000054
  • Name: sequence_variation_affecting_coding_sequence
  • Definition: Any of the amino acid coding triplets of a gene are affected by the DNA mutation.
  • Synonyms:
  • Type:
  • Comment: OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect.

VFB Term Json

{
    "term": {
        "core": {
            "iri": "http://purl.obolibrary.org/obo/SO_1000054",
            "symbol": "",
            "types": [
                "Entity",
                "Class",
                "Deprecated"
            ],
            "short_form": "SO_1000054",
            "unique_facets": [
                "Deprecated"
            ],
            "label": "sequence_variation_affecting_coding_sequence"
        },
        "description": [
            "Any of the amino acid coding triplets of a gene are affected by the DNA mutation."
        ],
        "comment": [
            "OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect."
        ]
    },
    "query": "Get JSON for Class",
    "version": "c58c844",
    "parents": [],
    "relationships": [],
    "related_individuals": [
        {
            "relation": {
                "iri": "http://purl.obolibrary.org/obo/IAO_0100001",
                "database_cross_reference": [],
                "label": "term replaced by",
                "type": "term_replaced_by",
                "confidence_value": ""
            },
            "object": {
                "symbol": "",
                "iri": "http://purl.obolibrary.org/obo/SO_0001580",
                "types": [
                    "Entity",
                    "Class",
                    "has_subClass"
                ],
                "short_form": "SO_0001580",
                "unique_facets": [
                    "Class"
                ],
                "label": "coding_sequence_variant"
            }
        }
    ],
    "xrefs": [],
    "anatomy_channel_image": [],
    "pub_syn": [
        {
            "synonym": {
                "scope": "has_exact_synonym",
                "label": "mutation affecting coding sequence",
                "type": ""
            },
            "pub": {
                "core": {
                    "symbol": "",
                    "iri": "http://flybase.org/reports/Unattributed",
                    "types": [
                        "Entity",
                        "Individual",
                        "pub"
                    ],
                    "short_form": "Unattributed",
                    "unique_facets": [
                        "pub"
                    ],
                    "label": ""
                },
                "FlyBase": "",
                "PubMed": "",
                "DOI": ""
            }
        },
        {
            "synonym": {
                "scope": "has_related_synonym",
                "label": "sequence variation affecting coding sequence",
                "type": ""
            },
            "pub": {
                "core": {
                    "symbol": "",
                    "iri": "http://flybase.org/reports/Unattributed",
                    "types": [
                        "Entity",
                        "Individual",
                        "pub"
                    ],
                    "short_form": "Unattributed",
                    "unique_facets": [
                        "pub"
                    ],
                    "label": ""
                },
                "FlyBase": "",
                "PubMed": "",
                "DOI": ""
            }
        }
    ],
    "def_pubs": []
}